Scaffold OpTDRAFT

Basic Information
Taxon OID	3300000928 Open in IMG/M
Scaffold ID	OpTDRAFT_10029303 Open in IMG/M
Source Dataset Name	Marine plume microbial communities from the Columbia River - 25 PSU
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Maryland
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000928 Open in IMG/M

Scaffold ID

OpTDRAFT_10029303 Open in IMG/M

Source Dataset Name

Marine plume microbial communities from the Columbia River - 25 PSU

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Maryland

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4870
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (13.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4870

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (13.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location Name	Columbia River plume, coastal ocean
Coordinates	Lat. (^o)	46.233	Long. (^o)	-124.16	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River plume, coastal ocean

Coordinates

Lat. (^o)

46.233

Long. (^o)

-124.16

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014147	Metagenome / Metatranscriptome	265	N
F049627	Metagenome / Metatranscriptome	146	N
F051922	Metagenome / Metatranscriptome	143	N
F065800	Metagenome / Metatranscriptome	127	N
F070126	Metagenome / Metatranscriptome	123	N
F080086	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
OpTDRAFT_1002930311	F070126	AGG	MRIYQLYTYCREVIEKYPALRDDVMRHFALAEMECEDDCSSEEHEVELSLTDINDLVADYEMQMGLQK*
OpTDRAFT_1002930314	F049627	N/A	MKLLKYTAAALALASCASNTQLFEVTHVICESDSTIDVWSSNAFVRTDIQITPDSIHFFEAIGEFNKMIKTESIDYTNVLDITDSTLTIQQPDQVTTYLLFDLQNHYE*
OpTDRAFT_100293033	F065800	N/A	METKFTPTNPEELVGFDSVLEEFNTINDSAYVFTNSYSSNYDVYVGSESTADGYEIWIINVDNEGPIIGENVYYYEPRAYDIFNHIGGGWRDDLIVYTELGLDEIEDYMIGELCTNYDNYLNELEDAE*
OpTDRAFT_100293034	F051922	N/A	MQRLSLYERLNPDVKAKLIANQLDYEFTVGMVIAKLDSTLFWDELTVRDISNLVVFSDSDMPIDATTMLRGDSNLIQPQNEVI*
OpTDRAFT_100293035	F014147	N/A	MTTIKNTFERQLHEKFGVNVMSTMGTSSALLADGANGTDYLDYYDTNDGWIFGVHPELQAFIDAHGWECEWQNSEVLDLYPSHDWTGDFSEAQLVSHWNAMCDYITAPQDHIYANDDEAFEMLQLTIRQTVAASKNDRYNFDDKWLTLDGYGNPMSFNDLTQYIDVPELEEYLIAHALI*
OpTDRAFT_100293037	F080086	N/A	MTNITAIEVSLEALEKECQAHDFKFMENPWRHRHWFNEYDRRAKIFTLLERLGHSSKAIEVYNTYAPDFAKRPLSSSYY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold OpTDRAFT_10029303

Overview

Ecosystem & Geography

Associated Families

Sequences