Scaffold OpTDRAFT_10004134

Overview

Basic Information

• Taxon OID: 3300000928
• Scaffold ID: OpTDRAFT_10004134
• Source Dataset Name: Marine plume microbial communities from the Columbia River - 25 PSU
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9285
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (30.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River plume, coastal ocean
• Coordinates
  • Lat. (^o): 46.233
  • Long. (^o): -124.16
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067103	Metagenome	126	Y
F089162	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
OpTDRAFT_1000413420	F089162	N/A	LYLSINNLKPERDMETTNQIEKALEKKVNAEIKEIVEQFTNACKALGSKYGAHVFQDLKHKDSSITTLNPEEFKNIIFNSLQKKYGPSMLKKKSEELIAKLDLI*
OpTDRAFT_100041344	F067103	N/A	MIKLKDILTERKASESKAFKAVEDNLQHIAYQFAEINPRFLGSGYWGRAYQTDAGRVLKVTSDPQEVAIASRFKKLSSRPHIVGIYDVRPIKRVTIPFGSDGRIHDVFPDGYYVIHMDAVTPLESYKDGKIAEVWEKQFLHRMFLREDLTDQQIRDRFDRIAEHYGVFEDYDRLMDQRKKILQDAKAVGLSVSEAHSGNVGFNQHGNFVIYDMQSKRYADRSGPNPNNLGRPVDLTPDDMKYDWTGIMDGV*