Scaffold OpTDRAFT_10001167

Overview

Basic Information

• Taxon OID: 3300000928
• Scaffold ID: OpTDRAFT_10001167
• Source Dataset Name: Marine plume microbial communities from the Columbia River - 25 PSU
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 136645
• Total Scaffold Genes: 159
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 122 (76.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River plume, coastal ocean
• Coordinates
  • Lat. (^o): 46.233
  • Long. (^o): -124.16
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024091	Metagenome / Metatranscriptome	207	Y
F048918	Metagenome / Metatranscriptome	147	N
F094941	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
OpTDRAFT_100011671	F048918	GGTGG	MSNIHYLKRSRNEAVIKVYVTDSSGDTVDIALSDLISNGETYTAADASVTIKEIHWGCKVNKHLDVSRWDGVAPHGHYYLVNSGSLEMKGFVDNVYSDRDIRIIGDGPFHC
OpTDRAFT_1000116782	F094941	GGAG	MLKTGTTLALILSASVAYAGGHEAHEEKNGPFMNGTFEVYIDDTNTEGTVDTRLEVMGGYETDLETPILNWAGFGARFDTNYALNRSLDNTITEKQAGIGIGGARLYFGETDAQRLGFAKTSKIGAPVIITKPSSRIDHNEKIVLAFGGWDHNDEFEFNSYRLKREMPFGGVIGWNPEDDSLYYGSTVRVAIVDASVMQIKKDDETQTGASIGASFHRLGLPVGVGYEQWTDDENTRRDVGIMYNHSKKLMLTAHRVMDDDLGFTYNYLAAIHTEGPIELGLYLHQGKTQDNPWTGQTVSSDDSIKATFKYKF*
OpTDRAFT_1000116789	F024091	AGG	MSKIQAKIKIIMDEIQELMESHPRAHLKEGSNIHALMASAGLYFQHMDDENKDYYQFVSMAIEEEAEWNV*