Scaffold JGI11643J12802_10343789

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI11643J12802_10343789

Scaffold JGI11643J12802_10343789

Overview

Basic Information
Taxon OID	3300000890 Open in IMG/M
Scaffold ID	JGI11643J12802_10343789 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	886
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)	.1016
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022806	Metagenome / Metatranscriptome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI11643J12802_103437892	F022806	GGA	VTAQGSAYMRFRRAFDRGNVTEALSAAAEVQFVSLADALELTLLLADGDLEKYNRAALRWHVRFAEETKNVDIRESQAVLALLAAIPANALAAAALAELLSRRRSCE

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