Scaffold JGI11643J12802_10026416

Overview

Basic Information

• Taxon OID: 3300000890
• Scaffold ID: JGI11643J12802_10026416
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2216
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Depth (m): .1016

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006289	Metagenome / Metatranscriptome	377	Y
F049538	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI11643J12802_100264162	F006289	GGAGG	VPLLERLIETLRQLRSHHRRRLAFLNPPIERRRPRIQMEDYAARHSIDHTLDRKAELRRLAPGNPEAAARYHQLLTYELQGLRELVATLQTTAGGRDLQECLAESRAEIERLEIEVAWCASLPTMEPTADAR*
JGI11643J12802_100264163	F049538	GGAG	MRNLFLLLALLGLVGITLGVLEAMRGASGPHGVPFSYENYGGPGSVIAGLLLVLGSLYLRSVWRERR*