Scaffold AL16A1W_10001846

Overview

Basic Information

• Taxon OID: 3300000887
• Scaffold ID: AL16A1W_10001846
• Source Dataset Name: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illumina
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13359
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Source Dataset Sampling Location

• Location Name: Axel Heiberg Island, Nunavut, Canada
• Coordinates
  • Lat. (^o): 79.26
  • Long. (^o): -90.46

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005803	Metagenome / Metatranscriptome	390	Y
F032983	Metagenome / Metatranscriptome	178	N
F040797	Metagenome	161	Y
F053667	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
AL16A1W_1000184611	F053667	GGAGG	MRKLKTILVASVMVASLYAAAGTAWARSESGQRGTAWTDTGGPTLSGGPSGTSWEVFGFGFDF*
AL16A1W_1000184614	F040797	AGG	LGGCVRLLVFTLWRAIAAALLAVLLTRVDTFVEGRHSDSLTGKAWRAYRSRGGKKSVRRGTPPNAGGAIDTSGRPRP*
AL16A1W_100018462	F005803	GGAGG	VKQPVKRFVPMWALQFVIGVFVVLIAIAVAVGLLGPVMRGPTAFFDELGKTISRIAPQPQADLRADDQLKAVIKAMPEGKLRVGTIVDDQNRVVFTITADRAVVKAAVRPGDELRIARDGSVEIVPTGIPGVIDSLQRAIEDLKRKFFGP*
AL16A1W_100018463	F032983	GAGG	MLLFAIGIMAGIALGMIIVGFLAIGAYDRGYSEALQRRKAWRTELVARTVVGTRALVSARRAS*