Scaffold EsDRAFT_10020638

Overview

Basic Information

• Taxon OID: 3300000883
• Scaffold ID: EsDRAFT_10020638
• Source Dataset Name: Estuary microbial communities from the Columbia River - 5 PSU
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1060
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River estuary
• Coordinates
  • Lat. (^o): 46.235
  • Long. (^o): -123.91
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048776	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
EsDRAFT_100206381	F048776	N/A	EPKRFGTEALAPLPPDASPALDAKGIKRVQKIVGSLLYYARAVDMTVLIALSSIAVEQTKATENTLKRCLQLLDYLASHSDAKVRFRASDMILNIHSDASYLSEAKARSRACGHFFLGWMPRDGKPIRMNGAFHVSTTILRFVVASAAEAELGALYHNCQTGVIFRLTLSEMGHPQPRTPVHCDNATAVGIANNSIKRQRSRSMEMRFFWIGDRVAQDMFHLQWHPGQENLADYQSKHHVGSHHTYVRPWYLHMDNSPQVLPRAVSPRELKGCVGTPKDGYIRKVPLPRVPRIQSASHVHDTDDTCYLEQDTRIPTWGDLHRSHTDLGRRKLMPISTALV*