Scaffold FwDRAFT_10127719

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10127719
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2832
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026552	Metagenome	197	N
F036695	Metagenome	169	N
F049433	Metagenome	146	N
F049442	Metagenome	146	N
F086640	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_101277192	F086640	N/A	MKKFILLEEEKLQIKSMYGLTEAPMTPPAPARPTTVMDTLSVAPNKLLFQNSTNKDNTIFLSAIDGAGKVIPNTTYKYKIGGSYSFFDFSVNIRNLKRDAQGNLIGEVLPSNSMAASAMRTLIPKQNLTKDGWLMIKIPNQKLTEGIQSLKSSKGQTAEIDAGQGVSVTLQYLGK*
FwDRAFT_101277193	F049433	N/A	MKKFIITEEEKSRILGMHQEHGYNSLNESPSGVGFGPEMNGLKIQKSEQNEQDVEQINDPKIINAVTATLKKLMMSPKFSTDNMLFKLIEEGKLVKAYRLHRNLNTNVDYVDYELLDDMLNNPETKDIVRLLPNLKNTLINYYS*
FwDRAFT_101277194	F049442	N/A	MNKENLEQGLTKLLKTFYSKKYDRDFSDLTVVLDEYEEDADDVDDEGNWSSAESYYFTVYSNDFDGLPIQKLYELARELFGNIIGSKNWIDIEFKKYEN*
FwDRAFT_101277195	F026552	N/A	MEITKVIEKLMNRDSFLNLLENDIIEKFEVSVSPFESKILVIKMFLNITKDEFLGTGESTPRLSEWEVRGKLWEDYNLDPAWWHAHIIPNRILKPLVGKDYFIKILLFVVDKNGIHLFTEN*
FwDRAFT_101277197	F036695	N/A	MEMTYTDKAILELLNNPKIIPPNDIIHEYTVASHNDVELLVIKVILNIDVSDKGQRGDGERMLYENNFDAYKLSETIIKKILRPLGLLKTISWGVLIVIDASGNRLIEHSMIKN*