Scaffold FwDRAFT_10090059

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10090059
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3172
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001460	Metagenome / Metatranscriptome	690	Y
F007468	Metagenome / Metatranscriptome	350	Y
F053291	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_1009005910	F053291	N/A	ELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMIKYMEAIEC*
FwDRAFT_100900597	F000263	GGA	METDTTLLPPHLQRLVDAGVSGTDILHGHLKFMMLEAEQILDNCIEVEEESGEAMDSMERTNAEGFLDALVQVYQLTYQLAFAISERTKARESR*
FwDRAFT_100900598	F007468	GAGG	MLNQFIEYMKIHLISLNQDLEMNPESINVIDIPGQIEATRHLLSVATDILNEDVQGKGY*
FwDRAFT_100900599	F001460	GGAGG	MLGYTEADLNRMTNAVHDAKLFYLKYPSDLLDKSELVNDLQDTVSFLQGLWAEGYFDNA*