Scaffold FwDRAFT_10034964

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10034964
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7982
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F006841	Metagenome / Metatranscriptome	363	Y

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_1003496412	F006841	AGGAGG	LATTVYSVEEITLQNGATVKLKPLSIKELRKFMIAVQRTADVTTEDETLDILIDACAVALEKQLPDLVADRDLLEDALDVPTINRILEVCGGIKLDDPNQLAAMVLAGQN*
FwDRAFT_100349647	F001229	N/A	MNDLIGSLLSMKVDVYRQIDKQDPNTGAIKKEWIFFKTVNCHAKGVISNSATARGSDSQTFSNKYKNEQIVQIRTWDRLTTREKITNIRDSENNVIWKELNFPSDSPTVFEVIGTTPITDPFGKTMGFNSSVMRSENQQIGL*
FwDRAFT_100349649	F000258	GGAGG	MTTDYKLDATLEIRKYLWDQILTIGILEENDYYSDNVGEAIVPIIPVQQSPELNQFLSGKSHIVYDKIGMSYEDNWAICCEQVLFTIYSTDVSEINQIRNFMTDLFRRMDGSAKDLNLWSGVSDKFKFYSIFISEISPTAPSEELQGFLSADVVLEIKYSRISDTNGRFI*