Scaffold FwDRAFT_10027805

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10027805
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6430
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002502	Metagenome / Metatranscriptome	553	Y
F007525	Metagenome / Metatranscriptome	349	Y
F008496	Metagenome / Metatranscriptome	332	Y
F016662	Metagenome / Metatranscriptome	245	Y
F030094	Metagenome / Metatranscriptome	186	Y
F043404	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_1002780511	F008496	AGGAG	MEFTTSEPTFGIPATITPMSEQVAVTPAYDPNAEMLIKKGYYYGTPANAEYATVTADDISRTYWRLDALQETNNRNSRAQDKLKDYLVENYDELGDHADEIAKIFSIDLSKEVEVEFNVTIKATISMPVNEDVSDLSVYDFDITLESNESKYEVQEFDADIDSIDEKY*
FwDRAFT_1002780514	F002502	GAG	MDKIQTPTVGSQFTTAKSGVTGTVQEIIKNQNGTLRIKLDVNGQDRWTTVK*
FwDRAFT_100278052	F007525	AGGA	MKTLEGVTVEYTQTIPTSKQMSEFYVWQEGAESYATVTYLDRVVEVERNGEMHLTLPYFINGELSDEGATQVRYSDELEAAGISDDIQLMQFLKTISNSGFEIYRMNPWWEVFAHNEDMGEVYDTFYEAIDAAIDHILDDRNW*
FwDRAFT_100278055	F030094	AGGA	MKLRGIFEGTFESVWSMEVPQAEWDKYLKEHPGIDETDSDDIQQMWDYFKSIGCYDEIDDTVDTDVVMTGIETYGVEVEIN*
FwDRAFT_100278056	F016662	AGGAG	MTYLVATTEVIYDEQDLIKMMLATGEYGIHGHPISHEAMVEFVKDQEWQIEHHLFLDNYDVPAQISIKDEDGTDLFFAKNKYEIK*
FwDRAFT_100278057	F043404	AGGA	MIDTDNPLLQTLADDFVDLHGCGGIELEQWETAYNFVKHFYHTEEMVQIIIRSKK*