Scaffold FwDRAFT_10027099

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10027099
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4182
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001460	Metagenome / Metatranscriptome	690	Y
F006984	Metagenome / Metatranscriptome	360	Y
F049617	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_1002709911	F001460	GAGG	MLGYTESDLNKMINAVHDAKLFYLRYPSDLMDKTELRSDLEMAVSFMQGLWAEGYFDHTN
FwDRAFT_1002709913	F049617	GAGG	MNSEDIGLPPHLQRLVNAGVPGIDIMHGELKNLMLIAEQEFQEISKEEEESDFSDAMISMDRTRAEGRLDTL
FwDRAFT_100270994	F000311	N/A	APDRLSLEMAYWDAQITGLDPEFMPPLTFNVGTGSIEKVSRIRDKYNLSESYWSDREATGYKER*
FwDRAFT_100270995	F001043	AGGAG	MSDYKDGFDDGYKFAREEMMEKLSEIDITDIDTWILDRLCEMIEGGTL*
FwDRAFT_100270998	F006984	AGGA	MPNWCYNTLTIQGPKSEVDMIKDRLNKPFTLAQETFGMGDISSMGFPTKIEQVSYSNPVFSFFNIHSYTRDIWYG*