Scaffold FwDRAFT_10018225

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10018225
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11176
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F008245	Metagenome / Metatranscriptome	336	N

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_1001822516	F008245	GAGG	MTEDKNTLELISDITEFNDLHEFMKDEHLDKAMAIVVKLLMNPDVPSAKAPHLIMELQAMSTKFAVMASVYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS*
FwDRAFT_100182256	F000376	GGAG	MSEYQEKAKECKCCGKHVPLPTVMKELNGIVLCPTTFANVMEYKRIWSVIGKRPSGSIRKHFSEYVQSIVEDENQIGNK*
FwDRAFT_100182258	F000369	AGAAG	MNEIEPAVHFDRMNKVVEELLKGNSPTQIANSTGFKRAEVVELIDEWKEVVHNDVSLRGRAKEAISGADQHYAMLIKEAWKTVEDADTQGQLNVKAGALKLIADIETKRITMLQAVGVLESNEIASQIAETERKQEILVGILKEVTAGCPKCKLDVAKRLSQITGIVESVVIEDADVV*