Scaffold FwDRAFT_10012458

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10012458
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6044
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011668	Metagenome / Metatranscriptome	288	Y
F034182	Metagenome / Metatranscriptome	175	Y
F041023	Metagenome	160	N
F048162	Metagenome / Metatranscriptome	148	N
F080052	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_1001245810	F011668	AGG	MNARKIALWMVLISFAFLGMAFLTSCSGFQNPSVCLKTTYGTLCYELPDIEGLKK*
FwDRAFT_1001245812	F034182	AGGCGG	MNGHTFHTFIGTGAPAMAVLISFSEVEAWLRIASLLLGICIGAVSLYKMLKTKKP*
FwDRAFT_100124582	F041023	GGAG	MTDEELHDAECTFTRNILCGMIEQAVQDLRSEKVFVSKQMNAHQEIDRDTALHFIRSKAFQGICDVLALPADKIKTQALKYESSD*
FwDRAFT_100124583	F080052	N/A	MEPLTFLALFATCTLCAFIAGYLIGNIKATCDSEQTRRWWMNRQIRRERR*
FwDRAFT_100124588	F048162	N/A	LKKRKQPTVESERTEALAEAKRLLSEHYDCGLAIVSWEQAGETMHGEFVFGNKYAVEGLASDSFSILFPDAEEEEEDEEA*