Scaffold FwDRAFT

Basic Information
Taxon OID	3300000882 Open in IMG/M
Scaffold ID	FwDRAFT_10010787 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the Columbia River
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Maryland
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5098
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location Name	Columbia River freshwater tidal region
Coordinates	Lat. (^o)	46.18	Long. (^o)	-123.18	Alt. (m)	Depth (m)	1
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F009267	Metagenome / Metatranscriptome	320	N
F011222	Metagenome / Metatranscriptome	293	N
F044972	Metagenome / Metatranscriptome	153	N
F046247	Metagenome / Metatranscriptome	151	N

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

320

Metagenome / Metatranscriptome

293

Metagenome / Metatranscriptome

153

Metagenome / Metatranscriptome

151

Protein ID	Family	RBS	Sequence
FwDRAFT_100107873	F046247	N/A	MIISPNDQGWAFDESTAWKLVYDGSTIIFFDETEKAISTQSVLFVGTKDECDAEIARLGLVDVSAQENDNGLDIHADAGEGAY*
FwDRAFT_100107875	F044972	N/A	MPATVITSTVASGVEFGLLQETGLLLNSFSRSVQSDKATVMDALGDTVAVAYFNKTATISLDGVINGGVNYELANILTLANDTTSYGVAGGSVIVDSVAETTGAGTFKTINVSATQYPEID*
FwDRAFT_100107876	F011222	N/A	MEPNKRFFHTINLKCAVALATLNFKMNKPPVTRLVRTDGKESTEFWFEGENAKGQDASQVYRQMTKEGDELEAKDPENPLCYIRAALANRDVLVDIIRNTPRLIEVEHNGKRIAISENASDKTKQEMTRFLK*
FwDRAFT_100107877	F009267	N/A	MKKIKDNELRAAIFGVSVEKLEKDDEILRVQAMEDGPKIVNGRILRPITALTISWMQRNEVFSGEMDPVWKAAAFTFLHSEPMSTIRGAVNDRDTFINAVDSWIEKNMTHHHETTAMSDEMGKAFDLYNSASPASQPGESSGSGN*

Protein ID

Family

RBS

Sequence

FwDRAFT_100107873

N/A

MIISPNDQGWAFDESTAWKLVYDGSTIIFFDETEKAISTQSVLFVGTKDECDAEIARLGLVDVSAQENDNGLDIHADAGEGAY*

FwDRAFT_100107875

N/A

MPATVITSTVASGVEFGLLQETGLLLNSFSRSVQSDKATVMDALGDTVAVAYFNKTATISLDGVINGGVNYELANILTLANDTTSYGVAGGSVIVDSVAETTGAGTFKTINVSATQYPEID*

FwDRAFT_100107876

N/A

MEPNKRFFHTINLKCAVALATLNFKMNKPPVTRLVRTDGKESTEFWFEGENAKGQDASQVYRQMTKEGDELEAKDPENPLCYIRAALANRDVLVDIIRNTPRLIEVEHNGKRIAISENASDKTKQEMTRFLK*

FwDRAFT_100107877

N/A

MKKIKDNELRAAIFGVSVEKLEKDDEILRVQAMEDGPKIVNGRILRPITALTISWMQRNEVFSGEMDPVWKAAAFTFLHSEPMSTIRGAVNDRDTFINAVDSWIEKNMTHHHETTAMSDEMGKAFDLYNSASPASQPGESSGSGN*

NMPFamsDB