Scaffold FwDRAFT_10010206

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10010206
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58589
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (31.17%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038243	Metagenome	166	Y
F068824	Metagenome / Metatranscriptome	124	N
F080908	Metagenome	114	N
F081331	Metagenome	114	N
F084229	Metagenome / Metatranscriptome	112	N
F097332	Metagenome	104	N
F099280	Metagenome / Metatranscriptome	103	N
F100402	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_1001020625	F097332	N/A	MTREYAQRKSNEDYMCGRISKEEWDFQFEELGNVRIWSKDGKIHQLKEEHERLRPDNGTTKQN*
FwDRAFT_1001020626	F084229	GGA	MIEPNIAQKAISFVRSAAAFVRAGMPIRNKEQIEERLLICNQCVHYDPTAFSGAGKCGVCGCNMEIKVVMDTERCPLDHWA*
FwDRAFT_1001020635	F068824	N/A	MNWTTEQLKEKGYTLAPDGHYYYHANKFNSPARRLPDTLTQHAPKRSLVKIPKAKEPSEDCTAKCNPLYTLSITRYSTKTLDVDNLAGGSKPLIDQIRYSKLIRDDNPESVEITFSQVKVKTQAEQRTEVRITKA*
FwDRAFT_1001020639	F080908	AGGA	MSEPHYASEVERLKECDKDYRSIAAQLSVFCSAAIFALRAANKDLEDAQVKCEIIPDPFAEQAIDDMFAQYLESLRDYPEIMAIALKFIQQSR*
FwDRAFT_1001020651	F081331	AGAAGG	MNELNFDTLTGNGWKQFKDFLQNSDVAFYKTFAGHEECRCNEGKKKQVEVYVYDHRKHGTTGVGYDVKCTGELPDGTWLELKSHGLNQDHVDPKAQELLSIWDWSVKNNLTRSKN*
FwDRAFT_1001020658	F100402	N/A	MATKRNNHPAFPVPHFGGDAKTGSVKPNSGMGMRDYFAAAALRGYRASEEFSGELPEIVAELSFVDADAMLIEREKQSFNQ*
FwDRAFT_1001020669	F038243	N/A	MRSKIEYKLTPNGTNEFLELVDFAEEFDHKIIEHPNINVYAHYRDGVLFGYSDHVYMPIVYPAFHPKHTRPQDVIQVMSDWKAHSQLSNSPGYIGVPLINERPNFTNEIIKKLGLTPLKREVYSLT*
FwDRAFT_1001020674	F099280	AGGA	MAKPTTEAAMPEPEPEMGMDLPEDMSGIASPMAEEGAVTISVAKSKFDELHGIAMQLAGIIDALAADVEGQKAMTESLEGQVPAAENAAMASEEDFLNSIASEGSMR*