Scaffold FwDRAFT_10007858

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10007858
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6991
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000980	Metagenome / Metatranscriptome	814	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001043	Metagenome / Metatranscriptome	794	Y
F002387	Metagenome / Metatranscriptome	565	Y
F003603	Metagenome / Metatranscriptome	477	Y
F006984	Metagenome / Metatranscriptome	360	Y
F007468	Metagenome / Metatranscriptome	350	Y
F051117	Metagenome / Metatranscriptome	144	Y
F062746	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_100078581	F000980	GGA	VHVSGVRYNTNMTQYQKYTWVCTGDCDALIEYTLKDGFGWPNGVMQLTCPCNSRCTLVSVEDATIPYTDTPLQTKEEPMETETSAVTVPDTYNANLLVTYKVIHGYSDAEYATDKVASIEWSLHNGRQAQKHNSVLNGKIDAVKEIICEAYADSQDQDTLREIAEALSIELIKEVEFTASIEVSGTYSYNILENDYDLDLESEVTDALYADSNNGNIEIGDTEVCNVREC*
FwDRAFT_1000785811	F062746	N/A	SKLFYLRSPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFDHTD*
FwDRAFT_1000785812	F007468	GGAGG	LTTQTKSSYFLEYMKLHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNNSNERYNNDNI*
FwDRAFT_1000785813	F000263	AGG	MTISDDMFTDKESLVLPPHLQRMVDAGVTGLDIMHGELKNLMLIAEQELADAIEREEETEEAMDSMDRTNAEGRLDMLVELYQLTYQLSFAIGARTL*
FwDRAFT_1000785815	F000441	AGGAGG	MMKIKMSDVYINDQLNKAQALLWSGSLHEVDEAHNIISKLIQDRLGNG*
FwDRAFT_1000785817	F001019	AGGAGG	MTHYEPSLEILEVEYSCSPGGVDLFEVYDKSDIPLSVPIYETENLTDAVLFCYNLGKDFTVRTLAEWNERELSYASV*
FwDRAFT_1000785820	F003603	AGGCGG	MKTKEEQIGELLANSVEDHFFNPAALGRYLADQPTYTLDRVMEVVAWVIEKQARRYDRELETGGAISEGLAIASKLDLVIDKISRENELKNVKLPMTPNQRRAFIKSLPKEQEQSYRYSWLHETNNQSNTFVNQGM*
FwDRAFT_1000785821	F051117	AGGA	MSDALCTKYGCSYELDLDGQVTCTNCGAMDDDMLPRRTYNEPDLNQSGYGYDELKDFDMGYKDRPKGKITPFMGPNR*
FwDRAFT_100078583	F000311	GAG	MYFELTAPDRLSMEMAYWDAQIIGLDPQALTPLTFNIGTGSIEKVSRIRDKYNLIESYTSDYEPTGYTRR*
FwDRAFT_100078584	F001043	AGGAG	MSDYKDGFDDGYKFAREEIMEKLSEIDITDIDSWILDRLSEMIEGGKL*
FwDRAFT_100078586	F000450	AGGCGG	MGDRANFVFVQPNGQSIVLYGHWAGHQMLQRLAESAVKAQGRWSDPSYATRITISNMIGEGWAMETGWGLSVNEIADNEHKIPVIDFQQQTFSLHEEAPYSDESNKIRGMKNEAIFTQDLSNFCEKYSDQLVRV*
FwDRAFT_100078587	F006984	AGGA	MPNWCYNTLTIQGPKSEVDMIKDRLNKPFTLAQETHGMGDINANGFPTKIKEVTYSNPVFSFFNIHSYKDEGITDEEYA
FwDRAFT_100078589	F002387	GAGG	MASFLEDVNQMVIDACYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDKFVQSEFNKFYELKEGDEGYIDIL*