Scaffold FwDRAFT

Basic Information
Taxon OID	3300000882 Open in IMG/M
Scaffold ID	FwDRAFT_10007574 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the Columbia River
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Maryland
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000882 Open in IMG/M

Scaffold ID

FwDRAFT_10007574 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from the Columbia River

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Maryland

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22988
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (26.47%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

22988

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (26.47%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location Name	Columbia River freshwater tidal region
Coordinates	Lat. (^o)	46.18	Long. (^o)	-123.18	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River freshwater tidal region

Coordinates

Lat. (^o)

46.18

Long. (^o)

-123.18

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009267	Metagenome / Metatranscriptome	320	N
F011222	Metagenome / Metatranscriptome	293	N
F018136	Metagenome / Metatranscriptome	236	N
F025459	Metagenome	201	N
F034928	Metagenome / Metatranscriptome	173	Y
F046247	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_1000757420	F025459	AGGAGG	MKMTLEFDETERYEHEVACKALDILILVDDIDQELRSALKHESGAFAKMDEDTMEAVRAWIWEERTKRNIPELT*
FwDRAFT_1000757433	F034928	AGG	MTNQMQWRGYPLRCWPNHQDDCYRWDWEILIDGKWIEVVTQATRWIEEEAEETLQRYLKRKKE*
FwDRAFT_100075744	F046247	N/A	MTIQPNEQGWAFDESTAWKLVYGGNTIIFFDETEKAVSTQSVLFVGTKAECDAEIARLGLVDVTAQGNDNGLDLYADA*
FwDRAFT_100075745	F018136	N/A	MITDSTYTLTLEKALTDTFVLALQQEMQSALVVTSAENFGTMTLPACFVKCTRQRESIIDSAIFQFSVDIALIVQADDMDQMAMENLWSQVLCISHDITGLKTKLNAVRPQYAFVFGILRDGPVSLSTNERHFERSVTITVHASLFAS*
FwDRAFT_100075747	F011222	N/A	MTPRLKGVALLYMDANKKFFHTINLKAAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGENAKGQDASQVYRQMTKEGDELEAKDPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK*
FwDRAFT_100075748	F009267	N/A	MKKNKDNELEKDDEILRIQAMEDGPKIVNGRTLRPITALTISWMQRNEVFSGNMDLVWKSAAFAYLHSEPYSAIRSVVNDRGAFINAVDSWIENNMIHHLEISAMTDAMNAAFELYNASATESKAGSGSGN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold FwDRAFT_10007574

Overview

Ecosystem & Geography

Associated Families

Sequences