Scaffold FwDRAFT_10006598

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10006598
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10804
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012345	Metagenome	281	Y
F028780	Metagenome / Metatranscriptome	190	N
F040591	Metagenome / Metatranscriptome	161	Y
F088520	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_100065981	F088520	N/A	TTNMENKYWFSEESSNASANSIIVDVFNRYDDEQIGTIKLNYSYDKNNNYEEWTIESTEWHQDLTLQECDEAMQELLDSATDNFHEFAFECYNYDPREDDDEWWCV*
FwDRAFT_1000659820	F028780	N/A	MKATLDRYISSHYEELYRYTRYFCSKYNPKLTIDTVISNAYLHCIEINDNTEDVGKVKSYILNSIKRQVIWKNVDSYKDERILASEIAVPDTFDDGEDLNYKIAIEQQYQGWKSSVDIYRDGLTDNVKIAVAKAYFDKNFTTARSMAEYFNIPVTSAHYLITEIKNTLKTIHNEDKR*
FwDRAFT_1000659821	F040591	N/A	MKIKDEYKGMTLMKNTALGNITVVVDNIDMNKYDYYVSIGFGYLFEKETIRYEGIEADEQTEAPKVIKPKKKRKRANGPIE*
FwDRAFT_100065984	F012345	N/A	MRFKLTYHIGPVLVQEWIFTSKGLAYWKKMDLIETGRFNDGKFKVTPV*