Basic Information | |
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Taxon OID | 3300000882 Open in IMG/M |
Scaffold ID | FwDRAFT_10002612 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from the Columbia River |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Maryland |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14747 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (78.26%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River freshwater tidal region | |||||||
Coordinates | Lat. (o) | 46.18 | Long. (o) | -123.18 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003067 | Metagenome / Metatranscriptome | 509 | Y |
F005088 | Metagenome / Metatranscriptome | 412 | Y |
F012572 | Metagenome | 279 | N |
F046904 | Metagenome | 150 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
FwDRAFT_1000261215 | F005088 | N/A | VGRGSFGYLVAQLAVETGIAPQYLLDLDTEMFKNMLKVLNDRAKEMKNANRGNRR* |
FwDRAFT_100026124 | F012572 | AGGA | MSSQMELINLKAMTGKLFIDGELIAEYKVETCDKCARVTQLDKFGYQKNSYENIIWFCKDCR* |
FwDRAFT_100026126 | F046904 | AGG | MNSLDFIVVGMVCLFMGLFIYAAYEMGYKVGLGEGYLRGRNIAKALRDAEAAK* |
FwDRAFT_100026127 | F003067 | AGG | MSQAQAYIAVALGIATLSGLMAGLVRHLVKYYLTELRQDGNGGHNLVGRVERIELRVDKIYELLLEDRLAK* |
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