Scaffold FwDRAFT_10002612

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10002612
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14747
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003067	Metagenome / Metatranscriptome	509	Y
F005088	Metagenome / Metatranscriptome	412	Y
F012572	Metagenome	279	N
F046904	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_1000261215	F005088	N/A	VGRGSFGYLVAQLAVETGIAPQYLLDLDTEMFKNMLKVLNDRAKEMKNANRGNRR*
FwDRAFT_100026124	F012572	AGGA	MSSQMELINLKAMTGKLFIDGELIAEYKVETCDKCARVTQLDKFGYQKNSYENIIWFCKDCR*
FwDRAFT_100026126	F046904	AGG	MNSLDFIVVGMVCLFMGLFIYAAYEMGYKVGLGEGYLRGRNIAKALRDAEAAK*
FwDRAFT_100026127	F003067	AGG	MSQAQAYIAVALGIATLSGLMAGLVRHLVKYYLTELRQDGNGGHNLVGRVERIELRVDKIYELLLEDRLAK*