Scaffold FwDRAFT_10001873

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10001873
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4792
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F005054	Metagenome / Metatranscriptome	413	Y

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_100018732	F000258	GGAGG	MANYKLDAMLELRKYLWKELYTRNIFDEDDYWSDNLNENIIPIIPVQQAPELNQFMSGKKHIVYDKIGMSYDDNWLICCEQILFTVYSTSVADINEIRNYMTDEFRRMDESARDINRWTGLSDMFKFHSIHIADISPTAPSEELQGFFSSEIILEIKYSRDTDTNGASSTLGRFA*
FwDRAFT_100018733	F001900	GGAG	LDNSGLLVQAASGLERMMHSNQKGPLRDSTVAQISAYVYYEASVMAKLTSSKKFQNSFSKLMFDQINLDFGNYIDALARSKPKSLHHVYEWKKAGNKTHRLFKLNKTTQTGLSFGINFDFLPSKTMVPSSNRRRSHMFANKASVMENGKPLVIKPKSAERLVFEMDGEVVFMPKGASVTVRRPGGSAATNQFTLAYSRFFSGRLVSDSMKRSGFQRLFNSSITRALGVPSNIKRVQYSFSANSIRAQADSALALAFGGSM*
FwDRAFT_100018734	F001229	GAG	MSGIVDSVLSMNLDVYRQSEIQDPDTGAIVKEWNYYKTIACHAKGVISNSATTRSSDKQIFSNKYLNDQVIQVRTSEKLTAREKVTNIKDVEGNTIWNEINYPSETPTVFEVMGTTPMTDPFGRVIAYNSSLKRSENQQIG*
FwDRAFT_100018735	F005054	N/A	MAEILVKSQSPIVHQVFWNGDIAVTDSLPIVKIYDTTLDATISPAVLPTTLLSTLTSAIDESNPGTYIVNIPYSLTGRNRTLKLQWEYSIGGTAVVRSDTVFVVTPYVDFNHVQDLGFSTDSSDPGYKSYKELLKAERYARKQIEEYTGQKFFLYDDIQVVYGYDSDTLPLPAKINALHSLTMNDTLLLDNINNINNWNFPVQISESGYGIRVNRASLVDNTVYTANGMVPPSIHDYSGLFNSGVPYKVTGRFGWSEVPDNVELAAIELIKDYFSKDTAWRNKYVKSISTFDWDFEYTGDAYTGTGNAFADNLLADYVLTIKAEII*