NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI10215J12807_1156536

Scaffold JGI10215J12807_1156536


Overview

Basic Information
Taxon OID3300000881 Open in IMG/M
Scaffold IDJGI10215J12807_1156536 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Wisconsin Restored Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2255
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameWisconsin, USA
CoordinatesLat. (o)43.303611Long. (o)-89.332778Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037661Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
JGI10215J12807_11565361F037661GGTGGVNARAFLTIVAIVQGALFAALIVLIVLNRWFRLRRSTRLTPRREAVDASMRRWAAGTAPLTGVLVGLSRLPVPLAIDTLVKWSARIPGERWRQLALALEQAWWAKLVRTNSSSARWWKRLESARFLSVAAMPHDVARLTRLISDPHPAVHVAAVAALERMENTALTLTALDRL

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