NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold AL20A1W_1140715

Scaffold AL20A1W_1140715


Overview

Basic Information
Taxon OID3300000880 Open in IMG/M
Scaffold IDAL20A1W_1140715 Open in IMG/M
Source Dataset NamePermafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-65cm-20A)- 1 week illumina
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)850
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Source Dataset Sampling Location
Location NameAxel Heiberg Island, Nunavut, Canada
CoordinatesLat. (o)79.26Long. (o)-90.46Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069463Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
AL20A1W_11407151F069463N/ADALHPSLTGRVVVNGPPPAVTIGASVPILIYGQATHISGTVSNAKPGETVTLWAQPYGQASPVQLATVLTTTNGVWDFVVKPTLLTTYEAHWKSLVSSKVSLAMRPNVLFSASKGMGFVKVKTNHSLQGRKVYVQRFTRFGQWVKMKRVILGRSSQRLFYLRLPRGTYTLRVFMSYNQAGAGYLDGFSRTITYKRK*

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