Scaffold AL9A1W_1004092

Overview

Basic Information

• Taxon OID: 3300000878
• Scaffold ID: AL9A1W_1004092
• Source Dataset Name: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-5 cm-9A)- 1 week illumina
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 638
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Source Dataset Sampling Location

• Location Name: Axel Heiberg Island, Nunavut, Canada
• Coordinates
  • Lat. (^o): 79.26
  • Long. (^o): -90.46

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014596	Metagenome / Metatranscriptome	261	Y
F092889	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
AL9A1W_10040922	F014596	AGGAG	MGMNEIDHTIYPYTVGREDCKVLPRSFKSLAEAEAYFAKQDKGALERGEFYLDGPEQDNAASDRTVGGVRAAPALA*
AL9A1W_10040923	F092889	GGA	MNPKTIVAAPAAAGPAEVDSGWTPIPIESQVTRGAWTREIEELCRALAAQQRVHCPSTDAEEK*