Scaffold EsTDRAFT_1018212

Overview

Basic Information

• Taxon OID: 3300000867
• Scaffold ID: EsTDRAFT_1018212
• Source Dataset Name: Estuary microbial communities from the Columbia River - metatranscriptome 5 PSU
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2488
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River estuary
• Coordinates
  • Lat. (^o): 46.235
  • Long. (^o): -123.91
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F013084	Metagenome	274	Y
F018927	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
EsTDRAFT_10182121	F006220	N/A	MKKFKKFIEELAIASGTEMMRASQMRTTTFKDKSKYSRKAKHKNRQDKNSGDSYLQSL*
EsTDRAFT_10182123	F007310	N/A	MREVYWNNTERWNNHHHYEPLIKDITGFDLTQNLCSESVKYMAKRLSDTKYQRRFKTLYTIYENEYNALVEKFNNQAESNGKIEVA*
EsTDRAFT_10182124	F013084	N/A	MGILSILGLMEETKNTVLHRGHNVKNWLVLGNDCYALECIDCKMTCMIKEKPLPNEIKASGEALALNCVKPVKEKKLRKK*
EsTDRAFT_10182125	F018927	AGG	MKKHIEITRHLTVDGTSTYYVVEKSKNSSSIIWNGTSKQAAYQVAYRNARKESTPLYDTLYKAEVDRNGVKHIIPVGNELLEVK*