Scaffold EsTDRAFT_1017713

Overview

Basic Information

• Taxon OID: 3300000867
• Scaffold ID: EsTDRAFT_1017713
• Source Dataset Name: Estuary microbial communities from the Columbia River - metatranscriptome 5 PSU
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1177
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter → Polynucleobacter antarcticus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River estuary
• Coordinates
  • Lat. (^o): 46.235
  • Long. (^o): -123.91
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009332	Metagenome / Metatranscriptome	319	Y
F017828	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
EsTDRAFT_10177131	F009332	N/A	MLVLGLAVAQSVTVQKPVECADTATLLRGLSGSDYKERPIWWGIEPGATASRYSLFVNEETKSWTLIQFDEKIACVLGTGENSTQVFTGPKI*
EsTDRAFT_10177132	F017828	AGGA	MNLVKWICFAIMFAGAVVVSFNLDPIVGIILLFAGNAAWLATAVRTKDWASAANFAMLATVWFLGIVQYYKG*