Scaffold EsTDRAFT_1016329

Overview

Basic Information

• Taxon OID: 3300000867
• Scaffold ID: EsTDRAFT_1016329
• Source Dataset Name: Estuary microbial communities from the Columbia River - metatranscriptome 5 PSU
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2330
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River estuary
• Coordinates
  • Lat. (^o): 46.235
  • Long. (^o): -123.91
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014503	Metagenome / Metatranscriptome	262	Y
F085113	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
EsTDRAFT_10163292	F085113	GGA	MYAYSEEWKKFKPPDDVLEQCHQVLITDVDCEQAGEPFWKIKKWCLAHCKSYVWFDVTDVSDVGYHWDEIAAYWFHDEKDAVMFTLKYKSGK*
EsTDRAFT_10163295	F014503	AGGA	VKASVHHWRFEDGIKPINPGNQFGETILPRGWYCWVYPEDDFAFEDWMTRICPTTDICHRFNSGDPMWTVYIKDDVEATVFQLMWM*