NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI10213J12805_10601438

Scaffold JGI10213J12805_10601438


Overview

Basic Information
Taxon OID3300000858 Open in IMG/M
Scaffold IDJGI10213J12805_10601438 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Wisconsin Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)510
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameWisconsin, USA
CoordinatesLat. (o)43.312222Long. (o)-89.370833Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034981Metagenome / Metatranscriptome173Y
F082909Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
JGI10213J12805_106014381F034981GGAGGMVIHYPPARLRQNSDRPTAITNVLVATSGSSSRTGDIALGTPTCSARTRQGRWAL
JGI10213J12805_106014382F082909GAGGMPRCPLCRSALVTITFGLYPTAICTSCSARWIQDGHQQRAINQIQEPSLMALGPSLTASSSTSSTLSALTS*

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