NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI10213J12805_10306765

Scaffold JGI10213J12805_10306765


Overview

Basic Information
Taxon OID3300000858 Open in IMG/M
Scaffold IDJGI10213J12805_10306765 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Wisconsin Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)534
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameWisconsin, USA
CoordinatesLat. (o)43.312222Long. (o)-89.370833Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001016Metagenome805Y

Sequences

Protein IDFamilyRBSSequence
JGI10213J12805_103067651F001016GGGGGVGPQDPKDVTRDTARDLSALVGELAALKGDVTHWHIDPEYEVLRYRLEGAHAAAEAALVEARRRVRLDEGR*

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