NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI10213J12805_10176722

Scaffold JGI10213J12805_10176722


Overview

Basic Information
Taxon OID3300000858 Open in IMG/M
Scaffold IDJGI10213J12805_10176722 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Wisconsin Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)946
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameWisconsin, USA
CoordinatesLat. (o)43.312222Long. (o)-89.370833Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007998Metagenome / Metatranscriptome341Y
F042770Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
JGI10213J12805_101767222F007998AGGMFASLSAKVVTAVCAVVGAIALLGTFLLTLTGGSAYLQFGLALIFFAMFLVGSYWWMVFGPGRGL*
JGI10213J12805_101767223F042770GGAGGMQRVLDTVVLGAKTIMRRIELGGTLFVAAVIGVLLTSREE*

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