Scaffold JGI10213J12805_10176722

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI10213J12805_10176722

Scaffold JGI10213J12805_10176722

Overview

Basic Information
Taxon OID	3300000858 Open in IMG/M
Scaffold ID	JGI10213J12805_10176722 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	946
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	Wisconsin, USA
Coordinates	Lat. (^o)	43.312222	Long. (^o)	-89.370833	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007998	Metagenome / Metatranscriptome	341	Y
F042770	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI10213J12805_101767222	F007998	AGG	MFASLSAKVVTAVCAVVGAIALLGTFLLTLTGGSAYLQFGLALIFFAMFLVGSYWWMVFGPGRGL*
JGI10213J12805_101767223	F042770	GGAGG	MQRVLDTVVLGAKTIMRRIELGGTLFVAAVIGVLLTSREE*

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