Scaffold AP72_2010_repI_A100DRAFT_1031246

Overview

Basic Information

• Taxon OID: 3300000837
• Scaffold ID: AP72_2010_repI_A100DRAFT_1031246
• Source Dataset Name: Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 747
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location

• Location Name: Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
• Coordinates
  • Lat. (^o): -10.171667
  • Long. (^o): -62.7875

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000788	Metagenome / Metatranscriptome	891	Y
F004333	Metagenome	443	Y

Sequences

Protein ID	Family	RBS	Sequence
AP72_2010_repI_A100DRAFT_10312461	F004333	GAG	VPQTPFKWKAELGSAFNTAYNAQLGNVTYYVTSRDYGHPAYLEVRDPRGGLKRLDLGNYHKIEQAKQACERHYAAGCDLGSAEKISR*
AP72_2010_repI_A100DRAFT_10312462	F000788	N/A	MNKSPDVGKATKPRTVYEKAVQDFTETAQQLARLNQHFRQASFXEFXMLMGLDDEVLKRYGLPKPTVKRALLEVYQTVVLNQQR*