NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold AP72_2010_repI_A100DRAFT_1004101

Scaffold AP72_2010_repI_A100DRAFT_1004101


Overview

Basic Information
Taxon OID3300000837 Open in IMG/M
Scaffold IDAP72_2010_repI_A100DRAFT_1004101 Open in IMG/M
Source Dataset NameForest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2058
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location
Location NameAmazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
CoordinatesLat. (o)-10.171667Long. (o)-62.7875Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001088Metagenome / Metatranscriptome782Y
F023076Metagenome211Y
F090704Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
AP72_2010_repI_A100DRAFT_10041011F023076AGGGGGVTSSAEEYRRYARQCLEIAPTFQDKEARATLLGSAQAWSRLAHLALANRHIAELTVQIARQRVIVKHALDTGQGSEMAESLLDALEGSLRIFEKHRIFLLWLQRSSSALQPGDAATGWSL
AP72_2010_repI_A100DRAFT_10041012F090704GAGMNRFAACSDPRAETGPRIAKMTKDEMVEWFKSAPMGSRHQRMLWTACKIAHLTGVTEGRAYQMLLVALIEAERGPPDEYLDVLGLTR*
AP72_2010_repI_A100DRAFT_10041014F001088N/AMTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDKRLKGIEAYLKPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGA
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