NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold AP72_2010_repI_A100DRAFT_1001558

Scaffold AP72_2010_repI_A100DRAFT_1001558


Overview

Basic Information
Taxon OID3300000837 Open in IMG/M
Scaffold IDAP72_2010_repI_A100DRAFT_1001558 Open in IMG/M
Source Dataset NameForest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3346
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location
Location NameAmazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
CoordinatesLat. (o)-10.171667Long. (o)-62.7875Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012020Metagenome / Metatranscriptome284N
F018142Metagenome / Metatranscriptome236N
F023055Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
AP72_2010_repI_A100DRAFT_10015581F012020N/AMIRSHLAQANRYIAEMRADIARERVIIEHALDAGYPSGVAESMLHALEGALRIFEKHRELVLDQLKRRLSE*
AP72_2010_repI_A100DRAFT_10015582F018142GAGVEYKRHLIEAFEDQPGRWFAYFRRLDGQNIAGTESNSLRTPAARYSKEDAIEFAKEAIDELPDA*
AP72_2010_repI_A100DRAFT_10015584F023055GGAGGMALDEIVRMVDAYFRHWDDTEKMWSEYERAGFRLIVIGGELRLSELRPVERMKYRCKHRRLVERWRDMRLEGSKLDGAADAGALDEGRELGLFEDMVEGSDLGCEGNLPLSS*
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