Scaffold JGI12397J12024_1053296

Overview

Basic Information

• Taxon OID: 3300000829
• Scaffold ID: JGI12397J12024_1053296
• Source Dataset Name: Soil microbial communities from Moab, Utah, sample - Soil Crust Prior wet up (biological replicate A) 0A (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1333
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Source Dataset Sampling Location

• Location Name: Moab, Utah
• Coordinates
  • Lat. (^o): 38.714694
  • Long. (^o): -109.692944

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048032	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12397J12024_10532962	F048032	GAGG	MDTKKQDQKQAKTLPLTQLPIVTLTDKDMSSVNGGFAWAG*
JGI12397J12024_10532963	F048032	GGAGG	MDTKKQDQKPAKTLPLTKLPLVTLTDKDMSSVNGGGYNSWAG*
JGI12397J12024_10532964	F048032	GGAGG	MDTKKQDQKHTKTLPLTNLPIVTLTPKDMSSVNGGGFSWVG*
JGI12397J12024_10532965	F048032	GGAGG	MDNKKQSHKSGKTLPLTNLPIVTLTEKDMSSVNGGTQRVWSG*