Scaffold AF_2010_repII_A001DRAFT_10018064

Overview

Basic Information

• Taxon OID: 3300000793
• Scaffold ID: AF_2010_repII_A001DRAFT_10018064
• Source Dataset Name: Forest soil microbial communities from Amazon forest - 2010 replicate II A001
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1697
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location

• Location Name: Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
• Coordinates
  • Lat. (^o): -10.171667
  • Long. (^o): -62.7875

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000778	Metagenome / Metatranscriptome	895	Y
F009433	Metagenome / Metatranscriptome	318	Y

Sequences

Protein ID	Family	RBS	Sequence
AF_2010_repII_A001DRAFT_100180642	F009433	GGAGG	VLKFLHDHVEADVFDPHAVRILLAAFDGAWQSIQASGAKLSDRQIELVRETLAKYIIEQARHGELDECRLRDGALLHLAQSNLRPP*
AF_2010_repII_A001DRAFT_100180643	F000778	GAG	MGSDRIIVDAIKVAQDLLCQNLPAAQKLSDAAAVMRFRELVHSQAVRSALERSSDTLFAFALRAVERVISDQTRTNREMINRLWEMLDEPHLNQALGNPHNRRKMVGPH*