Scaffold AF_2010_repII_A001DRAFT_10004190

Overview

Basic Information

• Taxon OID: 3300000793
• Scaffold ID: AF_2010_repII_A001DRAFT_10004190
• Source Dataset Name: Forest soil microbial communities from Amazon forest - 2010 replicate II A001
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3321
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location

• Location Name: Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
• Coordinates
  • Lat. (^o): -10.171667
  • Long. (^o): -62.7875

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000257	Metagenome / Metatranscriptome	1447	Y
F002423	Metagenome / Metatranscriptome	560	Y
F020661	Metagenome / Metatranscriptome	222	Y
F020742	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
AF_2010_repII_A001DRAFT_100041903	F002423	AGGAGG	MAPKPKPVRSVFTVGMVLAMALTILAGMTWAVAQPSLSLIYRPELPLLY*
AF_2010_repII_A001DRAFT_100041905	F000257	AGGAGG	MTRRKREITGLMNERDFPHLVELALPPGAFRSVVLEIDAFHRDRRIPVRRGRNRHEAEQFHIRFCFPDAATADAFRNRFGGECFDPRTGRPRRMX*
AF_2010_repII_A001DRAFT_100041907	F020742	GGGGG	MENVEFRIMPNGKEGRWYWEVIKDGREXVARGVTDTEPAACEQAHEAAQKAELVK*
AF_2010_repII_A001DRAFT_100041908	F020661	N/A	VPAQRRLVASAAQRERDARAAAAQRRRVALVDDLIRRCLKHQYEDALAAPLSPRLATLITQLETQDVSA*