Scaffold BS_KBA_SWE02_21mDRAFT_10089978

Overview

Basic Information

• Taxon OID: 3300000792
• Scaffold ID: BS_KBA_SWE02_21mDRAFT_10089978
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 02_21m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 793
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: KBA site, Vaertahamnen, Baltic Sea, Sweden
• Coordinates
  • Lat. (^o): 59.363333
  • Long. (^o): 18.119167
  • Depth (m): 21

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053306	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
BS_KBA_SWE02_21mDRAFT_100899782	F053306	AGGA	MKTKFLYTIASALFLSACGQPQPITYENLVWVNNYYIDHPVAGMSAMAGGWMFRGAKEVGAEIRVGFLVPGSMNPDPEKRKAVLNTICPAKSEIIWQALPKENKLVINIWTEDRKFKDSVVC*