Scaffold JGI1027J11758_12991747

Overview

Basic Information

• Taxon OID: 3300000789
• Scaffold ID: JGI1027J11758_12991747
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1747
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014771	Metagenome	260	Y
F019704	Metagenome	228	Y
F093562	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI1027J11758_129917472	F093562	GAGG	MSVRSRLLAEAEKQISNPFLLCVLVSLRTRQQMMTGNANASTAELVDSALNELIAGVLEFERGKPRRAPLIRAESGIEESNGGLASPGIPAVSHTLSVEAP*
JGI1027J11758_129917473	F019704	GGAGG	MKRRIKVSELMQREGLHGEIVQLFHSQRTGMIHGDNGYDVTFNEESLVVGLSYGELSLGLKVSYGIFFATGSKLPTGINVQPAAGVPTATPQDAENVISARAGGTGVA*
JGI1027J11758_129917476	F014771	AGGAG	MRTKGSITQLIRRPRPGYILGEDGCLVAFDESALAGLDPRELSIGDWVEYEELDRMEGRRAAK