NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI1027J11758_12774100

Scaffold JGI1027J11758_12774100


Overview

Basic Information
Taxon OID3300000789 Open in IMG/M
Scaffold IDJGI1027J11758_12774100 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1124
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006757Metagenome / Metatranscriptome365Y
F020884Metagenome221Y

Sequences

Protein IDFamilyRBSSequence
JGI1027J11758_127741001F006757N/APPVKNELHAALLNLTVFKNFSTEDLIAMARTLPGGTKVHIPDRLTAIVLLLGTAPVHLIGAQSRVFQQQD*
JGI1027J11758_127741003F020884GGAGGMQIHNNWGELIGEINTTYTSAGEIITSNTMYDRGXXVXQXISVRDNQGQVRTTTVIGSKILP*

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