Basic Information | |
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Taxon OID | 3300000756 Open in IMG/M |
Scaffold ID | JGI12421J11937_10166912 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 533 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, Canada | |||||||
Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 20 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F083713 | Metagenome / Metatranscriptome | 112 | N |
Protein ID | Family | RBS | Sequence |
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JGI12421J11937_101669121 | F083713 | N/A | TMNEALELCLSKAPADIRNPNNGSLARVVGGAKLINWINDEAVEHCTPFQFNSHALVQRIRRARADLVESHVNELRWDEIQALALHHLDLLHGRMPFSNELKFVDLRFHIMDHCAHCGSLGHRSEACVEKTFPCCYDHGPGFDLPAHSIVCCPALHAYCRRCFIRGHFTESHGKGWK |
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