Scaffold JGI12421J11937_10042573

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10042573
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1532
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F031497	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_100425731	F000263	N/A	LTKGYKMNAEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLASAIEQEEISEEAMDSMVRTECEGRLDTLVELYQLTYQLSFAIGARNEA*
JGI12421J11937_100425733	F000441	AGGA	MRMSDNYINDQLNTAQKLLWGGSETENIEAHNIIAKLISDRIEQADLS*
JGI12421J11937_100425734	F000852	GGA	MTTKREYLKQQGITVGVRGRFSGAAKVALAEAVAKGVTFTAETPAKKAK*
JGI12421J11937_100425735	F031497	AGGCGG	MSKTQEIKVAESLVNLMDDHWFNPTIFGRYLAEQPIYTIDRVMEMIASVISEQAKMYDVYSNQGTYTEGLSLAKELNECIKAYQESNQLVNLKLPSRSYKVKREEPTERTYQFGWREEKDPFSQP*