Scaffold JGI12421J11937_10034979

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10034979
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1764
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004723	Metagenome / Metatranscriptome	426	Y
F015867	Metagenome / Metatranscriptome	251	N
F018713	Metagenome	233	N
F047570	Metagenome / Metatranscriptome	149	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_100349792	F015867	GAG	MKXKVTYYDYDSDSYLTKELYWMASYRGSFDFVPVDDGPKENWKGFSISGSGVNVFYNDKGMNITVDGFQEMKSGGYGKTTTVIQSVN*
JGI12421J11937_100349793	F018713	N/A	MTPDPNLWAEIPQEVKDAAILLGNYFKKQGIDSWTLYDVSSRQNFNGAYNQGLDTAISLVSEGSDMETIICGLENSKKQFPNECGDGIDYTKXF*
JGI12421J11937_100349795	F047570	N/A	MKMTDENKLKIVTLSHNIKALCYILDKKTFSEHCXTSGXFXXIDXLFDLAKKLKEMNKEE
JGI12421J11937_100349796	F004723	N/A	KRYMKKGDKFIHTDIVGRKYEVTYTGTRRTVKDCEFEFFVDDKGDSCFFTDTEVSKMKKVGYTHDENCL*