Scaffold JGI12421J11937_10017802

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10017802
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2649
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012770	Metagenome / Metatranscriptome	277	Y
F020684	Metagenome	222	Y
F032579	Metagenome / Metatranscriptome	179	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_100178021	F032579	N/A	QGKVAQIPALICTLGVVGTSMAVSPVKNRYGRADANANLMCWLAFNPEYMFIDDIPENGG
JGI12421J11937_100178023	F020684	GAG	VWTYALSAIEEATAVEVGYQRQKPYFGDPTKNINYSEGDLWEMWQHVVCAGSELAFARMVGKQDFVPHFNKWKSELDIPGLGEVRYSFPPIKGLRYTTRDDDNLIYILTTGGLCNKERRKAPDWKGPDYVAVGWLYGRDCKKNKWKYNDKTWYVPLEYLNRMETLPNGITE*
JGI12421J11937_100178026	F012770	GGA	VSQKQEDPHNYCHDCHLQFEDSFQLVDHYFEEGEEFDPYYILPNGYKLLLGSLLRFMFNHADEPNQIKLITQSTYVTLFASENGYDLVDELVEDMVVKSALVDFDQNLARLLETDNNDDEGGA*