Scaffold JGI12421J11937_10013190

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10013190
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3142
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F002869	Metagenome / Metatranscriptome	524	Y
F011276	Metagenome	292	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_100131904	F001008	GGA	MSKAKHKPYQWIDGESADRITSLNLKDYRAYLKKELAQWRKNPKTEDNPDGVWLHPDDVTGNIRRIEALNLIINDFIQTEDTIK*
JGI12421J11937_100131908	F011276	AGGAG	MIKGLMGEKGIVVGSGNTSVPYINQNQSNPMQGMIRVWGTDMQVFDGSAWMNIATSYATVSLDQETQDLLMWAKAQRVMAMNRLTLAQNNPALMKALEKLKKAEDNFELLSKFVEHDKERHEAMTTLGMCP*
JGI12421J11937_100131909	F002869	GGAG	MNNEITTEMLDRTMAWCQQNAFWGTPSAVPKVLDFYFEKTRSTVDEDWPESFTLEELAQALGIEQVRYRTYYSQDNLTLRLFVFRPHCTWDEQKIMLDMGFVIAQDGDSDTIPDQPIEEGVEE*