Scaffold JGI12421J11937_10012452

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI12421J11937_10012452

Scaffold JGI12421J11937_10012452

Overview

Basic Information
Taxon OID	3300000756 Open in IMG/M
Scaffold ID	JGI12421J11937_10012452 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3244
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio cholerae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)		Depth (m)	20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014609	Metagenome	261	Y
F023328	Metagenome	210	N
F028786	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_100124521	F014609	N/A	MINELIGIIGLLVTILVLTIRATVEITKMKSQLFPNGGSSLADKVTRLQIDVVKIRSTID
JGI12421J11937_100124524	F028786	N/A	MQSFNYKQLSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNVKSKIK*
JGI12421J11937_100124527	F023328	N/A	MTVYTPTYRVTIAGTVQTSTTLEDATITYGRNDFFEATQPSYCNLELLNLDGTSPVVELLDTIILEVTNSAGTYVKLFTGEVSGVYNRLAGAGLGGKPNTLQIQAVGALGLLVKRYAGSVAYPEELDGARITRILEETLYVAWEDISNTFTWNDFTTETWANYGVQGIDTIDVGRYEVLARPAEIDQAYNLTDTTQQSALGYLYDTPDFEIGYADAERRSANYTTNLIELDANLVNADIQTRLQTADIVNSVVIQYDDPVLEVEAQNDTSINNYGLLQEVRSTILAQTADATEQATNFVNYRGTPKISLEEVTVNLSNSDMTNTVRDNLLGVSMDTLLYLDNIPVGLIPEGYFEGFCEGWTWTLGRNNLGLAMSVSNSIYSTLDVQWEDYNSAIQWQNLANDYRWLDVV*

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