Scaffold JGI12421J11937_10011607

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10011607
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3370
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y
F009004	Metagenome / Metatranscriptome	324	Y
F015420	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_100116072	F003327	GAG	MINEFTQLAIKVQDEIANGDYTHQKYLQFREWYFQNYEGSKRNANRDFAMFDLMYGLDVPIKNDSNEDV*
JGI12421J11937_100116074	F004234	N/A	MNFIDLYKNGNQYISNWTTDYDSDVYIAGTIEPFTYNATETDDGDMSQFPLSDANLNLLKSKL*
JGI12421J11937_100116075	F015420	N/A	MKKLINYFTPVGEEQIAFAKALMVVFTAIISILFLFTFLELIS*
JGI12421J11937_100116076	F009004	N/A	MKTFNQILDYLEVQQQEDKLTTNQLHLIIQTLTTFLNKEQLQEIENLFNQFKK*
JGI12421J11937_100116078	F001808	N/A	MRYLAIILLLSSCSAQYHLNKAIKKGYSCEETGDTIRITTLDSIPVIINNDIIWEKFITTKDTIIKYKSVYVPKTRLDKKIEYRLKVKTIYKDRIVEKAQAKATRPRTRGNLSLLFVGVGIGLLLSYLFKFARDKYLF*