Scaffold JGI12421J11937_10009352

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10009352
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3795
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006112	Metagenome / Metatranscriptome	381	Y
F007524	Metagenome / Metatranscriptome	349	Y
F053806	Metagenome / Metatranscriptome	140	Y
F105150	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_100093522	F007524	AGGA	MRKLSNTHAVAINKLMLPLISTLAYIDEESDINTLKMYADDIAHNVAALCVFNSSLDASVLHDNIMRQDTCPREHFYTVLKYIEDNKLINANMFACR*
JGI12421J11937_100093526	F006112	AGGAG	MKQDYTLYIYKADKRTKTGERLFSTTVWTGRDETGMQREVEELHLHHYPRSQFRMEYCPSMKTVKNLMSGKDIQIPHDTPRSCDPSSELYWSM*
JGI12421J11937_100093527	F105150	GGAG	MYRYVCQMFYKDRLYSGHYWKDYSLARACREMDKLCEHSPGMRFELTDYATGAIIKTVEHTIPKQERTYAIL*
JGI12421J11937_100093528	F053806	AGGAG	MRYYDELATYERDGYTIIVDKSYEDMDPKDCFDDTCFDMKEMYNDIDSGNLDWFMLRVRVLVEGLELADEYLGAACTKTLAKY*