 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300000756 Open in IMG/M |
| Scaffold ID | JGI12421J11937_10007999 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4130 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (46.15%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, Canada | |||||||
| Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004133 | Metagenome / Metatranscriptome | 451 | Y |
| F033434 | Metagenome / Metatranscriptome | 177 | Y |
| F035768 | Metagenome / Metatranscriptome | 171 | Y |
| F062765 | Metagenome / Metatranscriptome | 130 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI12421J11937_1000799911 | F035768 | GGAG | MKITIEDRLLAAYQAQRLRLRDREDEDYRAKVEAEVFQKIIVDRVRRNLRLDLDKGTNVDLDV* |
| JGI12421J11937_100079992 | F004133 | GGA | MKYTKEITDKLIAEYKSGVSVALIAHNLEVPERSVIAKLSSLGVYTKKSYVNKRGETPVKKSEHIERIAELLDVNEELLESLEKVNKTVLKLIENKLSQTATESDLLEVN* |
| JGI12421J11937_100079993 | F033434 | N/A | MLFRKQEIHSLDFTGCEGLDLQGWETWCESMQLSHLHQWLLPQLVAWYGSWTLVLDDKSNYDCLATVKRNCPDPKSRAFYMLSRVKRSLLVPQQTKTPDYASLTPLILMGLKRMQGINYETFRGSSGLQYLLEPRLLDAIVLPSTDLEVVDGLGSNRLLEIQKQGLTTKSGKTAGSMKPARSTWSLTGIQDTEIGHLPKLTQTILTQCWLAHPELRTPYMILDLQNWDNMPQPLVTNDIFKAVQPKQELAGVLPWDL* |
| JGI12421J11937_100079999 | F062765 | GGA | MEWYRTRGLTQKQTKTATKDTMFYNIGDTYTTEDVSVSYSCGRIDVRGIPNEPYGDEIGVPPMLSTDWHAFGNWLWDVQTMSIWTLKDLITAYEQTHNKITWDTHE* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |