Scaffold JGI12421J11937_10007537

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10007537
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4262
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013634	Metagenome / Metatranscriptome	269	Y
F025485	Metagenome / Metatranscriptome	201	Y
F031456	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_100075371	F013634	N/A	MAIQLAPLLGAGLGALQQSKIEKAMAGEKTYTRPKTIFGKLIGGISGRTAAAEASAGTKTEPINSSVMNSLQPSAKSTPITGGFSFGGEATKRSYLPFAIVAAVVA
JGI12421J11937_100075372	F031456	N/A	MALIGSFPASASAVFNLDFLPEKLLVQSTSWPDQSLSSFSVVTSGIQLFSITNVDRLTALAKFDSGAILQDPNLTPSNQDNQTAQYLRLATGRVNKATTITGTNSAGAARNVYAASTSISDIARRAVEQSINPSANATFSNFEALIFNPANILRAQITFANGFSDEYTPEELAALYANYHVSDSGGYLQGLLCIDSDSGAGLISQVVIFNSSSASTVVLKTDYVQV*
JGI12421J11937_100075379	F025485	AGAAG	MENARKLLPIIIGGIVAVVVFFISRKVRQSSGNNQERSQILEKAREAKLAKSILRKSDEDDTQSIAS*