Scaffold JGI12421J11937_10005609

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10005609
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4957
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F035307	Metagenome	172	Y
F056615	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_100056093	F000258	GGAGG	MTDYKADIMIDLRKYLWNQLTANSIFTATDYYSDNIGQEIVPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEDNWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDDSARDANAYSGISSKFKFFSIFVADISPTAPSEELSGFLSSDVILEVKYARHLGTTGRFL*
JGI12421J11937_100056094	F035307	GGA	LDNSALLVTAASGLQKGMAGTSGKVLKDSTVAQISAAIYYQAQVVSKITTNKQFQKKFQSVIFKQIEEDFGLYVDSQSRMNPKSLHHMYEWKKTGNKTSRLFKLKVLSTDGLSFKITSNFLPSKSSVPNEFGKRRHVFINKASVMEAGMPLVIRPKFAERLVFETATGVVYMPKGASVTVTRPGGGKATGRFKIAYAQFFTGNLVNVSIKRSGFQQIFNSSLTKSMKLPSDVRKVKYSFNANTLNMHAESAIASAFGGAV*
JGI12421J11937_100056095	F056615	N/A	MYDLVDSVMPLLMDVYKQFDLQDADTGSIKKEWQFEKTVACSAKGNISNSSSSTAGDKQTFSNKYKNEETLQIRTIGKITLREKITNIRDQEGTVIWEELNFPSNTPTVFEVMGITPMIDPLGGVLAYNATVKRSENQTIGQ*
JGI12421J11937_100056097	F001106	AGGAG	MSFETLKVAELRKVAEDFAVDTDGLKNKADIIAALTEEGVTWSVYQKTIKDIEKAEDEFSEDAEEILPRFNPDAQPENTMLVRMTRENHRYDILNYTFTKEHPFVAMTSENAQEIFDKEEGFRLATPKEVQEYYA*